Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_04090Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)    
Predicted Functional Partners:
VM_04085
Uracil permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.737
VM_19805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
VM_13080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
lpoA
Penicillin-binding protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
  
     0.689
VM_04640
Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
VM_00465
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.631
VM_09095
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.592
VM_05625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.590
VM_19800
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.578
VM_01800
Cell division protein DamX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.547
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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