Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_04220Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
VM_04225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.824
VM_04230
Deferrochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.591
VM_08585
Cytochrome C heme lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.589
VM_14220
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
VM_15280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
VM_16435
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
VM_08275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
VM_18600
DUF445 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
purC
Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SAICAR synthetase family.
  
     0.435
VM_17215
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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