Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_05465Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
VM_05460
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.916
VM_05455
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.880
VM_05470
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.867
VM_16670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
VM_19870
Flagellar protein MotY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
VM_16560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.718
VM_05440
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.703
VM_05450
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.696
VM_05405
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.590
VM_05445
Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.574
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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