STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_05590Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)    
Predicted Functional Partners:
VM_05600
Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.963
VM_05595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.936
VM_05605
Thiamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.802
VM_05585
Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
VM_05610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0227 family.
 
     0.766
VM_05575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
VM_10630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
VM_18945
Fucose 4-O-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
VM_00230
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
VM_05615
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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