Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_05615NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)    
Predicted Functional Partners:
VM_05610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0227 family.
       0.695
VM_05600
Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.622
VM_05605
Thiamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
VM_16485
CoA-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.515
VM_12300
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.496
VM_03075
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.489
VM_03085
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.489
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.481
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
  
   0.455
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 
 0.451
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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