Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VM_02160 | lolA | VM_02160 | VM_09320 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.507 |
| VM_02160 | lolD | VM_02160 | VM_05645 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.701 |
| VM_05640 | lolA | VM_05640 | VM_09320 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.734 |
| VM_05640 | lolD | VM_05640 | VM_05645 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.989 |
| VM_05640 | lolE | VM_05640 | VM_05650 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein transporter subunit LolE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.983 |
| VM_05640 | mfd | VM_05640 | VM_05630 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.563 |
| VM_06810 | lolA | VM_06810 | VM_09320 | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.661 |
| VM_06810 | lolD | VM_06810 | VM_05645 | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.702 |
| VM_07120 | VM_07125 | VM_07120 | VM_07125 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.845 |
| VM_07120 | lolD | VM_07120 | VM_05645 | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.915 |
| VM_07125 | VM_07120 | VM_07125 | VM_07120 | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.845 |
| VM_07125 | lolD | VM_07125 | VM_05645 | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.950 |
| VM_20350 | lolA | VM_20350 | VM_09320 | ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.661 |
| VM_20350 | lolD | VM_20350 | VM_05645 | ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.756 |
| lolA | VM_02160 | VM_09320 | VM_02160 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.507 |
| lolA | VM_05640 | VM_09320 | VM_05640 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.734 |
| lolA | VM_06810 | VM_09320 | VM_06810 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.661 |
| lolA | VM_20350 | VM_09320 | VM_20350 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.661 |
| lolA | lolD | VM_09320 | VM_05645 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.669 |
| lolA | lolE | VM_09320 | VM_05650 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Lipoprotein transporter subunit LolE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.720 |
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