Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_06185Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
VM_06175
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.909
VM_06165
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.896
VM_06180
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.893
VM_06150
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.891
VM_06170
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
VM_06160
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
VM_06155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.765
VM_06145
Pilus assembly protein CpaC; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
VM_06130
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.727
VM_16720
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
 
     0.727
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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