STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_06470TIGR02647 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)    
Predicted Functional Partners:
VM_07245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
VM_19085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.633
rlmG
50S rRNA methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
  
     0.596
VM_10725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
VM_06460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
VM_06465
NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
VM_03295
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
VM_03065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
focA
Formate transporter FocA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
VM_19065
delta-VPH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.