STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_06505Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)    
Predicted Functional Partners:
lacZ
beta-D-galactosidase; Forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.951
galM
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
  0.926
VM_13280
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.692
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.687
VM_00615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
VM_17085
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
VM_12035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
VM_10645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
VM_13535
MSHA biogenesis protein MshI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
VM_15890
Competence protein ComFB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.