Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_06685Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)    
Predicted Functional Partners:
VM_06680
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.794
VM_06675
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.761
VM_06960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
VM_19180
Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
VM_13940
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
VM_04620
Protein phosphatase; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
  
     0.581
VM_02680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
VM_02685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
VM_17630
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
VM_17625
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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