Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
VM_06730Type B chloramphenicol O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
VM_14385
Hexapeptide transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.783
VM_20440
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.778
VM_05415
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.774
VM_08355
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
VM_06725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.716
VM_10455
Undecaprenyl-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.585
VM_06735
Ribosome recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
VM_14310
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.451
dprA
DNA protecting protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.448
VM_14305
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.413
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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