STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_06855RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (1274 aa)    
Predicted Functional Partners:
VM_19190
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.863
VM_19205
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.764
VM_09630
Aerobactin siderophore receptor iutA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.705
VM_06850
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.648
VM_16145
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.641
VM_01825
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.600
VM_14215
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.568
VM_07155
6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.564
VM_13460
MSHA biogenesis protein MshQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.558
VM_05660
DNA internalization-related competence protein ComEC/Rec2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.553
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.