Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
rlmF23S rRNA (adenine(1618)-N(6))-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. (364 aa)    
Predicted Functional Partners:
VM_06885
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.922
VM_06895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
VM_06880
NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.754
VM_09355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.488
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
      
 0.449
rlmJ
rRNA methyltransferase; Specifically methylates the adenine in position 2030 of 23S rRNA.
      
 0.436
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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