Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_06910AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
metAS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine; Belongs to the MetA family.
       0.762
VM_06900
Type IV pilus biogenesis/stability protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
VM_17305
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
VM_00615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
VM_18640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
VM_08860
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
VM_12725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
VM_07955
Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
VM_12035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
VM_18245
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.470
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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