Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_07010Accessory colonization factor AcfD; Derived by automated computational analysis using gene prediction method: Protein Homology. (1526 aa)    
Predicted Functional Partners:
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.639
VM_06430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.606
VM_17475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
VM_18585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
VM_06055
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
VM_15795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
VM_17405
Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
VM_17715
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
malT
Transcriptional regulator MalT; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.457
VM_06060
Phosphoadenosine phosphosulfate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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