STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_07030Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (170 aa)    
Predicted Functional Partners:
VM_01500
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.977
VM_04715
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 0.977
VM_03810
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.970
VM_07020
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
 
 0.915
VM_11515
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.799
VM_12305
Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.769
VM_09475
Kinase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.733
VM_03385
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.721
VM_09830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.721
VM_14905
Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.721
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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