Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_07445ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)    
Predicted Functional Partners:
VM_07435
Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.851
VM_07440
Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
VM_07450
Free methionine-(R)-sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.773
rsmF
16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
 
     0.754
VM_19190
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
VM_07465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
VM_07470
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.472
VM_02170
Zinc-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
VM_07460
C-terminal processing peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.465
proQ
RNA chaperone ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
       0.463
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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