STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_07815Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (468 aa)    
Predicted Functional Partners:
VM_07820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.689
VM_07825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.638
VM_10500
Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.541
VM_14130
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.490
VM_07830
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.487
VM_06830
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.475
VM_07835
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.421
VM_19235
Bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
 
0.420
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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