STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_07955Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)    
Predicted Functional Partners:
VM_07960
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
VM_07950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
VM_08425
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
 
 0.520
VM_05940
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
VM_13280
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
VM_04780
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
VM_08810
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
VM_18390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
VM_06910
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.