Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VM_07955Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)    
Predicted Functional Partners:
VM_07960
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
VM_07950
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
 
 0.602
VM_08425
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
VM_07965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
VM_07975
Molecular chaperone DnaK; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
VM_05940
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
VM_13280
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
VM_04780
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
VM_08810
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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