VM_08055 protein (Vibrio mimicus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

VM_08055

Sulfur relay protein TusE; Part of a sulfur-relay system. (109 aa)

Predicted Functional Partners:

VM_13790

0.990

mnmA

0.950

tusC

0.863

dsrH

0.827

VM_08050

0.785

VM_08045

0.651

VM_08035

0.642

VM_08040

0.642

VM_08030

0.609

tusA

0.436

Your Current Organism:

Vibrio mimicus

NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VM_08030	VM_08035	VM_08030	VM_08035	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
VM_08030	VM_08040	VM_08030	VM_08040	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
VM_08030	VM_08045	VM_08030	VM_08045	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
VM_08030	VM_08050	VM_08030	VM_08050	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	BAX inhibitor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family.	0.638
VM_08030	VM_08055	VM_08030	VM_08055	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfur relay protein TusE; Part of a sulfur-relay system.	0.609
VM_08035	VM_08030	VM_08035	VM_08030	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
VM_08035	VM_08040	VM_08035	VM_08040	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
VM_08035	VM_08045	VM_08035	VM_08045	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
VM_08035	VM_08050	VM_08035	VM_08050	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	BAX inhibitor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family.	0.695
VM_08035	VM_08055	VM_08035	VM_08055	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfur relay protein TusE; Part of a sulfur-relay system.	0.642
VM_08040	VM_08030	VM_08040	VM_08030	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
VM_08040	VM_08035	VM_08040	VM_08035	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
VM_08040	VM_08045	VM_08040	VM_08045	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
VM_08040	VM_08050	VM_08040	VM_08050	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	BAX inhibitor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family.	0.695
VM_08040	VM_08055	VM_08040	VM_08055	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfur relay protein TusE; Part of a sulfur-relay system.	0.642
VM_08045	VM_08030	VM_08045	VM_08030	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
VM_08045	VM_08035	VM_08045	VM_08035	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
VM_08045	VM_08040	VM_08045	VM_08040	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
VM_08045	VM_08050	VM_08045	VM_08050	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	BAX inhibitor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family.	0.711
VM_08045	VM_08055	VM_08045	VM_08055	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfur relay protein TusE; Part of a sulfur-relay system.	0.651