STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_08245Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)    
Predicted Functional Partners:
VM_08240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.955
VM_08250
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
VM_09075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
VM_12095
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.638
VM_03100
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.561
VM_13925
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.551
VM_17865
Nitric oxide reductase transcription regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.512
VM_02695
Diguanylate cyclase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.486
VM_09415
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.485
VM_03885
Flagellar biosynthesis protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.452
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.