Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
VM_08500Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
VM_08495
Iron-regulated protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
VM_08490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
VM_08505
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.982
VM_08485
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
VM_08480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.647
VM_08475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
VM_12160
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.572
VM_12155
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.483
VM_03475
FAD:protein FMN transferase ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
   
    0.481
VM_13755
Bacterioferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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