STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_08820Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0263 family. (106 aa)    
Predicted Functional Partners:
yeiP
Elongation factor P-like protein YeiP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the elongation factor P family.
       0.798
VM_02100
Lysine transporter LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
mukF
Condensin subunit MukF; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.
  
     0.744
VM_04390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
mukE
Chromosome partitioning protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.740
uspB
Universal stress protein UspB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
mukB
Cell division protein MukB; SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SMC family. MukB subfamily.
  
     0.733
VM_05790
Prepilin peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.729
VM_12335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
VM_05720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0304 family.
  
     0.719
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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