STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_09050Gonadoliberin III; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
VM_09055
alpha-L-glutamate ligase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.957
VM_09045
ATP-dependent Zn protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.939
VM_15615
Ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.689
VM_07020
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
   
   0.606
cmoB
tRNA 5-methoxyuridine(34) synthase CmoB; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
       0.554
VM_00520
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.495
VM_19805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
VM_16755
Phasin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
lpoA
Penicillin-binding protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
  
    0.450
VM_07210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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