STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_09075Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
VM_09070
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.887
VM_09085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.851
VM_09080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
VM_09065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.744
VM_09430
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
VM_08245
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.665
VM_09410
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.518
VM_09425
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.442
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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