Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VM_02165 | VM_05640 | VM_02165 | VM_05640 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.702 |
| VM_02165 | lolA | VM_02165 | VM_09320 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.669 |
| VM_02165 | lolE | VM_02165 | VM_05650 | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein transporter subunit LolE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.702 |
| VM_05640 | VM_02165 | VM_05640 | VM_02165 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.702 |
| VM_05640 | VM_18780 | VM_05640 | VM_18780 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.495 |
| VM_05640 | lolA | VM_05640 | VM_09320 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.734 |
| VM_05640 | lolD | VM_05640 | VM_05645 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.989 |
| VM_05640 | lolE | VM_05640 | VM_05650 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein transporter subunit LolE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.983 |
| VM_05640 | lptD | VM_05640 | VM_13180 | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | LPS assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.503 |
| VM_09315 | lolA | VM_09315 | VM_09320 | Recombination factor protein RarA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.768 |
| VM_09315 | serS | VM_09315 | VM_09310 | Recombination factor protein RarA; Derived by automated computational analysis using gene prediction method: Protein Homology. | serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.575 |
| VM_13850 | lolA | VM_13850 | VM_09320 | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.687 |
| VM_18780 | VM_05640 | VM_18780 | VM_05640 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.495 |
| VM_18780 | lolA | VM_18780 | VM_09320 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.717 |
| VM_18780 | lolE | VM_18780 | VM_05650 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Lipoprotein transporter subunit LolE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.495 |
| bamE | lolA | VM_10870 | VM_09320 | Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.689 |
| bamE | lptD | VM_10870 | VM_13180 | Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | LPS assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.598 |
| lolA | VM_02165 | VM_09320 | VM_02165 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.669 |
| lolA | VM_05640 | VM_09320 | VM_05640 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.734 |
| lolA | VM_09315 | VM_09320 | VM_09315 | Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Recombination factor protein RarA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.768 |
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