STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter ATP-binding protein OppD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (323 aa)    
Predicted Functional Partners:
VM_09390
Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
oppB
Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.995
VM_09400
Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
VM_09380
Oligopeptide ABC transporter ATP-binding protein OppF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  
 
0.981
VM_12110
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.944
VM_06545
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.925
VM_14635
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.925
VM_19555
Microcin C ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 
0.919
VM_20645
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.887
VM_19110
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.861
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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