STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_09665Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1269 aa)    
Predicted Functional Partners:
VM_09370
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.607
VM_04730
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.581
VM_09090
DNA transformation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.568
VM_09545
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.530
hpaA
4-hydroxyphenylacetate catabolism regulatory protein HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.511
VM_14580
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.511
VM_06580
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.465
VM_16135
Protein acetyltransferase; Catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.443
VM_15260
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.433
VM_09670
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.427
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.