STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_10490Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
VM_10485
UDP-N-acetyl-D-mannosamine transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.
     0.940
VM_10495
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.815
VM_10500
Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
VM_10530
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
     0.788
VM_10510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
VM_10515
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
VM_10520
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.768
VM_10535
UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
     0.766
VM_10505
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.742
VM_10525
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.742
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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