Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
VM_10715Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)    
Predicted Functional Partners:
VM_10710
tRNA pseudouridine(65) synthase TruC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.903
VM_10720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
VM_10725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.591
VM_19075
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.503
VM_04840
Ribosomal protein L32p; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
VM_19065
delta-VPH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
VM_14275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
VM_00360
Universal stress global response regulator UspA; Involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.435
rdgC
Recombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
  
   
 0.413
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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