STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_10725Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
VM_10720
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.840
VM_04095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
VM_01580
Cell division protein FtsN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
VM_10710
tRNA pseudouridine(65) synthase TruC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
VM_10715
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
VM_06470
TIGR02647 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
VM_03480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
VM_01930
Flagellar protein MotX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
metJ
Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family.
  
     0.543
VM_02530
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.