Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
cutCCopper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (252 aa)    
Predicted Functional Partners:
ppk2
Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
VM_12135
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.743
VM_07005
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.721
VM_11515
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
    
   0.691
VM_16775
N-acetyl-beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.659
VM_13290
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.626
VM_05985
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.563
VM_13285
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.556
VM_05965
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.553
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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