Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VM_11675Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)    
Predicted Functional Partners:
VM_11670
Norspermidine sensor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.870
yjjX
Inosine/xanthosine triphosphatase; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.
       0.851
VM_13540
RNase E specificity factor CsrD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.837
VM_08005
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.799
VM_15885
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.798
VM_15765
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.794
pheA
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.726
raiA
Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
VM_00340
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.617
VM_00805
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.574
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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