STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_11935MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)    
Predicted Functional Partners:
VM_11930
Multidrug efflux protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.837
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
     
 0.631
VM_11940
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
VM_19800
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
    0.469
VM_05575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.464
VM_16130
Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
VM_08625
Ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.446
VM_05940
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.418
VM_13280
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.413
VM_06690
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.