Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_12140N,N'-diacetylchitobiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (801 aa)    
Predicted Functional Partners:
VM_05200
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.954
VM_18925
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.938
VM_12145
Phosphonomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.891
VM_12130
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.806
VM_12105
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.731
VM_12110
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.714
VM_12115
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
     0.710
VM_12135
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.622
VM_12125
Chitobiase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
VM_07905
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.563
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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