node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VM_05355 | hrpB | VM_05355 | VM_12195 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.891 |
VM_05355 | rnd | VM_05355 | VM_05060 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.952 |
VM_05355 | rpsD | VM_05355 | VM_02075 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.995 |
VM_05355 | rpsE | VM_05355 | VM_02040 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.992 |
VM_05355 | rpsK | VM_05355 | VM_02070 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.995 |
VM_05355 | rpsQ | VM_05355 | VM_02000 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.971 |
VM_05355 | tmcA | VM_05355 | VM_19060 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | tRNA cytosine(34) acetyltransferase TmcA; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.956 |
VM_07025 | hrpB | VM_07025 | VM_12195 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.693 |
VM_13355 | hrpB | VM_13355 | VM_12195 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.663 |
hrpB | VM_05355 | VM_12195 | VM_05355 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.891 |
hrpB | VM_07025 | VM_12195 | VM_07025 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.693 |
hrpB | VM_13355 | VM_12195 | VM_13355 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.663 |
hrpB | mrcB | VM_12195 | VM_12190 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.798 |
hrpB | rnd | VM_12195 | VM_05060 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.811 |
hrpB | rpsD | VM_12195 | VM_02075 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.858 |
hrpB | rpsE | VM_12195 | VM_02040 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.731 |
hrpB | rpsK | VM_12195 | VM_02070 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.835 |
hrpB | rpsQ | VM_12195 | VM_02000 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.662 |
hrpB | tmcA | VM_12195 | VM_19060 | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA cytosine(34) acetyltransferase TmcA; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.671 |
mrcB | hrpB | VM_12190 | VM_12195 | Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.798 |