STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_13475MSHA biogenesis protein MshD; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
VM_13505
MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.971
VM_13470
MSHA biogenesis protein MshO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
VM_13465
MSHA biogenesis protein MshP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
VM_13480
MSHA biogenesis protein MshC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
VM_13460
MSHA biogenesis protein MshQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.933
VM_13485
MSHA biogenesis protein MshA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.925
VM_13490
MSHA biogenesis protein MshB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.894
VM_13520
Pilus (MSHA type) biogenesis protein MshL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.870
VM_13530
MSHA biogenesis protein MshJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.869
VM_13510
MSHA biogenesis protein MshN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.856
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.