STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_13680Fe3+ hydroxamate ABC transporter substrate-binding protein; Internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
VM_13685
Phage shock protein G; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
VM_13670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.750
VM_04455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
VM_08470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
VM_02755
General secretion pathway protein GspB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
bamC
Outer membrane assembly protein BamC; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.690
VM_00530
Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
       0.677
cysI
Sulfite reductase subunit beta; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
       0.677
VM_02150
TIGR03899 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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