Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_14215Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)    
Predicted Functional Partners:
VM_14220
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.796
VM_06855
RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.612
VM_12985
YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.572
VM_16095
2,3-dihydroxybenzoate-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.546
VM_16145
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.534
VM_14565
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.508
VM_14205
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.481
VM_09595
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.437
VM_16090
Salicylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.435
VM_16060
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.430
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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