VM_14555 protein (Vibrio mimicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

VM_14555

Iron-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)

Predicted Functional Partners:

VM_14560

0.996

VM_14550

0.994

VM_09595

0.985

VM_09605

0.977

VM_09600

0.920

btuC

0.782

VM_14565

0.754

VM_20115

0.734

VM_17550

0.726

VM_09585

0.703

Your Current Organism:

Vibrio mimicus

NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VM_09585	VM_14550	VM_09585	VM_14550	Siderophore ferric iron reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter permease FhuB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.566
VM_09585	VM_14555	VM_09585	VM_14555	Siderophore ferric iron reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
VM_09585	VM_14565	VM_09585	VM_14565	Siderophore ferric iron reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
VM_09595	VM_09600	VM_09595	VM_09600	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
VM_09595	VM_09605	VM_09595	VM_09605	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter permease FhuB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.996
VM_09595	VM_14550	VM_09595	VM_14550	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter permease FhuB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.991
VM_09595	VM_14555	VM_09595	VM_14555	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
VM_09595	VM_14560	VM_09595	VM_14560	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
VM_09595	VM_14565	VM_09595	VM_14565	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
VM_09595	VM_20115	VM_09595	VM_20115	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.955
VM_09595	btuC	VM_09595	VM_08655	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vitamin B12 ABC transporter permease BtuC; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.	0.797
VM_09600	VM_09595	VM_09600	VM_09595	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
VM_09600	VM_09605	VM_09600	VM_09605	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter permease FhuB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.992
VM_09600	VM_14550	VM_09600	VM_14550	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe3+-hydroxamate ABC transporter permease FhuB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.978
VM_09600	VM_14555	VM_09600	VM_14555	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-hydroxamate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
VM_09600	VM_14560	VM_09600	VM_14560	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
VM_09600	VM_14565	VM_09600	VM_14565	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
VM_09600	VM_17550	VM_09600	VM_17550	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
VM_09600	VM_20115	VM_09600	VM_20115	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.762
VM_09600	btuC	VM_09600	VM_08655	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vitamin B12 ABC transporter permease BtuC; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.	0.809

page 1 of 4

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About