STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_15025Conjugal transfer protein TraN; TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)    
Predicted Functional Partners:
VM_14995
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.852
VM_15000
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.799
VM_00920
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.604
VM_15015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
VM_15020
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
gspE
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.512
pilB
Type IV-A pilus assembly ATPase PilB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.512
VM_13505
MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.512
gspJ
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.496
VM_10830
Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.496
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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