STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_15895Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
VM_15890
Competence protein ComFB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.844
VM_15885
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
pntA
NAD(P) transhydrogenase subunit alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.
       0.703
VM_15905
NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.701
VM_15910
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
VM_15915
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
VM_15920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
VM_15925
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.622
VM_05265
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
VM_20060
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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