Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_160952,3-dihydroxybenzoate-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)    
Predicted Functional Partners:
VM_16090
Salicylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
VM_16080
Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.977
VM_16085
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.952
VM_16110
4-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.
 
  
 0.918
VM_16075
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.828
VM_14565
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.780
VM_16070
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.706
VM_16065
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.649
fabG
3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.643
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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