STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_161104-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (233 aa)    
Predicted Functional Partners:
VM_16095
2,3-dihydroxybenzoate-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
VM_16090
Salicylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.730
menF
Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.482
VM_16100
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.477
VM_16105
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.477
yciH
Translation initiation factor Sui1; Involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
VM_16120
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
VM_16075
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.439
VM_12985
YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.400
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.