Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_16225DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
VM_16215
Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.729
VM_16220
Antibiotic ABC transporter substrate-binding protein; With YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.729
VM_07420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
VM_06880
NrdH-redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
VM_17215
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
VM_16990
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
VM_18640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
VM_16205
Peptidase M16 domain-containing protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
    0.532
VM_16210
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.482
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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