STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_16855ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)    
Predicted Functional Partners:
VM_16850
Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
VM_16660
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.855
VM_16260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.843
VM_16845
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.836
VM_16865
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.743
VM_16655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
VM_16860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.678
VM_20365
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.584
thiP
Thiamine/thiamine pyrophosphate ABC transporter permease ThiP; Permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.546
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
   
 0.521
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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