Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccSTIGR01666 family membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (722 aa)    
Predicted Functional Partners:
VM_11435
Fe-S cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.778
VM_16920
DNA helicase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
VM_16930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.677
VM_16935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
VM_16940
3-hydroxy-3-methylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
VM_09100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.567
VM_01170
Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
  
     0.559
VM_00135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
VM_15635
Bifunctional PTS fructose transporter subunit IIA/HPr protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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