Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VM_17365Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (569 aa)    
Predicted Functional Partners:
VM_17370
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.997
VM_17360
Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
VM_17375
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.837
VM_06930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.792
VM_07130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.788
VM_02800
Outer membrane channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
VM_06850
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
VM_17355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
VM_10545
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.636
VM_03810
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.634
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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