STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_17580Protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)    
Predicted Functional Partners:
VM_16915
Peptidase M4; Extracellular zinc metalloprotease.
  
  
 0.696
VM_17575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.650
VM_12765
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
VM_12810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.625
VM_14240
Transcriptional regulator CadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.606
VM_06715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
VM_07310
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.569
VM_05065
Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.546
tatA
Preprotein translocase subunit SecA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
      
 0.540
VM_12750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.