Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_17915Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
VM_17930
Aerotolerance protein BatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
VM_17925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
VM_17910
Cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.917
VM_17920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.910
VM_17905
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.838
VM_17895
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
VM_17935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
VM_10045
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.544
VM_17900
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
VM_14995
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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